PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID ORUFI06G29170.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 196aa    MW: 21903.7 Da    PI: 6.3614
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
ORUFI06G29170.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF90.96.4e-29959151
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                     krien +nrqvt+skRr+gi+KKA EL vLCda+va+i+fsstgk +e++s
  ORUFI06G29170.1  9 KRIENATNRQVTYSKRRTGIMKKARELTVLCDAQVAIIMFSSTGKYHEFCS 59
                     79***********************************************96 PP

2K-box33.42e-12831403698
            K-box  36 RhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                       +++GedL+ L++ eL+ Leq+++ +lk      ++++++q+e+ +kk k   e+ ++L+++l
  ORUFI06G29170.1  83 QQRMGEDLDGLEFDELRGLEQNVDAALK-----EYHVITTQTETYKKKVKHSYEAYETLQQEL 140
                      699************************7.....59************************9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004322.6E-42160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006632.674161IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.06E-35283IPR002100Transcription factor, MADS-box
CDDcd002652.08E-44280No hitNo description
PRINTSPR004041.7E-28323IPR002100Transcription factor, MADS-box
PfamPF003192.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-283859IPR002100Transcription factor, MADS-box
PROSITE profilePS512977.0154146IPR002487Transcription factor, K-box
PfamPF014868.0E-883140IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010093Biological Processspecification of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 196 aa     Download sequence    Send to blast
MGRGKIEIKR IENATNRQVT YSKRRTGIMK KARELTVLCD AQVAIIMFSS TGKYHEFCSP  60
STDIKGIFDR YQQAIGTSLW IEQQRMGEDL DGLEFDELRG LEQNVDAALK EYHVITTQTE  120
TYKKKVKHSY EAYETLQQEL GLREEPAFGF VDNTGGGWDG GAGAGAAADM FAFRVVPSQP  180
NLHGMAYGGN HDLRLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1egw_A4e-17273170MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_B4e-17273170MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_C4e-17273170MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
1egw_D4e-17273170MADS BOX TRANSCRIPTION ENHANCER FACTOR 2, POL
3kov_A6e-17273170Myocyte-specific enhancer factor 2A
3kov_B6e-17273170Myocyte-specific enhancer factor 2A
3kov_I6e-17273170Myocyte-specific enhancer factor 2A
3kov_J6e-17273170Myocyte-specific enhancer factor 2A
3mu6_A4e-17271168Myocyte-specific enhancer factor 2A
3mu6_B4e-17271168Myocyte-specific enhancer factor 2A
3mu6_C4e-17271168Myocyte-specific enhancer factor 2A
3mu6_D4e-17271168Myocyte-specific enhancer factor 2A
3p57_A6e-17273170Myocyte-specific enhancer factor 2A
3p57_B6e-17273170Myocyte-specific enhancer factor 2A
3p57_C6e-17273170Myocyte-specific enhancer factor 2A
3p57_D6e-17273170Myocyte-specific enhancer factor 2A
3p57_I6e-17273170Myocyte-specific enhancer factor 2A
3p57_J6e-17273170Myocyte-specific enhancer factor 2A
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00077ChIP-seqTransfer from AT3G54340Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0033231e-161AB003323.1 Oryza sativa Japonica Group mRNA for MADS box-like protein, complete cds, clone:E20969.
GenBankAK0693171e-161AK069317.1 Oryza sativa Japonica Group cDNA clone:J023014M24, full insert sequence.
GenBankAK2892481e-161AK289248.1 Oryza sativa Japonica Group cDNA, clone: J100079D02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641661.11e-125PREDICTED: MADS-box transcription factor 16
SwissprotQ944S91e-127MAD16_ORYSJ; MADS-box transcription factor 16
TrEMBLA0A0E0Q2K81e-146A0A0E0Q2K8_ORYRU; Uncharacterized protein
STRINGLOC_Os06g49840.11e-124(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP57283552
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.16e-45MIKC_MADS family protein